Sequence
atgc intronic sequence ATGC exonic sequencegtgagttgtgtactatcttgcttccattatttatcattatttccttactattgagggtttacaacattgatccattgcagGTCTTCTTGGATATTGTGGAGAGTGTGAATCTTCTTATGTCTTCAAAAG
Basic information
species | Glycine max |
transcript | GLYMA01G40700.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G40700.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 5
gtgagttgtg-tactatcttgcttccattatttatcattatttccttactattga-gggtttacaacattgatccattgcagGTCTTCTTGGATATTGTGGAGAGTGTGAATCTTCTTATGTCTTCAAAAG
|||| || | | | | || || | ||| | || | |||| | | ||| || ||| |||| | |||| ||||| || ||||||||||||| ||||| |||||||| |||||||| ||||
gtgatttatccttttctttttctgcaattttccatggtgattttggtcattctgatggatttttgacatctgttcattacagGTGTTTCTGGATATTGTGGAAAGTGTTAATCTTCTAATGTCTTCCAAAG
upper sequence: GLYMA01G40700.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ22278 (Selaginella moellendorffii), 3'ss of exon 5
gtgagttgtgtactatcttgcttccattatttatcattatttccttactattgagggtttac-aacattg-atccattgcagGTCTTCTTGGATATTGTGGAGAGTGTGAATCTTCTTATGTCTTCAAAAG
| | ||| | |||| | | || || | | || | || |||| || |||||||| |||||||||||||| ||||||||||| ||| |
-------------------------------gtttgctgtttttcaaactttgatgctagactaataccgtatgctttctagGTGTTTTTGGATATCGTGGAGAGTGTGAACCTTCTTATGTCACAAAAGG
upper sequence: GLYMA01G40700.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ25669 (Selaginella moellendorffii), 3'ss of exon 5
gtgagttgtgtactatcttgcttccattatttatcattatttccttactattgagggtttac-aacattg-atccattgcagGTCTTCTTGGATATTGTGGAGAGTGTGAATCTTCTTATGTCTTCAAAAG
| | ||| | |||| | | || || | | || | || |||| || |||||||| |||||||||||||| ||||||||||| ||| |
-------------------------------gtttgctgtttttcgaactttgatgctagactaataccgtatgctttctagGTGTTTTTGGATATCGTGGAGAGTGTGAACCTTCTTATGTCACAAAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatttatcattatttccttactattgagggtttacaacattgatccattgcagGTCTTCTTGGATATTGTGGAGAGTGTGAATCTTCTTATGTCTTCAAAAG
ttatcattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttgtgtactatcttgcttccattatttatcattatttccttactattgagggtttacaacattgatccattgcagGTCTTCTTGGATATTGTGGAGAGTGTGAATCTTCTTATGTCTTCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA