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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctatatcacttttattctgattgccttggagccttaacaagtaaacttactgtaaaaaatttacagaatcaaattgtttaagaattacattttctccttccattctgtgttttatattattttggtgctgaacagtgttttctggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT

Basic information

species Glycine max
transcript GLYMA01G40210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40210.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g10370.1 (Oryza sativa), 3'ss of exon 4
gtaagccctatatcacttttattctgattgccttggagccttaacaagtaaacttactgtaaaaaatttacagaatcaaattgtttaagaattacattttctccttccattctgtgttttatattattttggtgctgaacagtgttttctggtgt-gcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT
                                                               || |  ||      ||  | ||  |||   | |   | | ||| |   |     | | |              ||  |||  | | ||   | ||||||   | ||| |||| |||||| | |||||    ||||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||||| 
-------------------------------------------------------------gtaagtacacg---ctaagctattacagaccgataaggttttcttacgcacaaacctgtgt------------tcgacaagttatatgtgacattgcagGGGGCTAAAGACAATCACTGACCGAGAAGTGGCATGCTTCATGATATCATGCAAGAACTCGACAAACATTGACTCTGTCATCGACTGGCTCGTGAAGCAC

upper sequence: GLYMA01G40210.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G007188_T01 (Zea mays), 3'ss of exon 4
gtaagccctatatcacttttattctgattgccttggagccttaacaagtaaacttactgtaaaaaatttacagaatcaaattgtttaagaattacattttctccttccattctgtgttttatattattttggtgctgaacagtgttttctggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT
                                           | |  | |  |   |  | | | | | |       | || ||   |||  | ||   |||    || |     |  | || ||      || ||||   | ||         ||||||   | ||| | || |||||| | |||||    ||||||||||  |||||||| |||||||||||||| || ||||| ||||||||||| || ||| | 
-------------------------------------------aaatatcagttcgatacacacactctgcta---tgattttttcctgaaaaatatcagctcgacacaattgtactcatctactac----atggtgaatgttatt---------gcagGGGCCTAAAGACGATCACTGACCGAGAAGTGGCATGCTTCATGACATCATGCAAGAACTCGACCAACATTGATTCTGTCATTGACTGGCTGGTGAAGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408134|gb|EV277942.1|EV277942
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|192309196|gb|FG999437.1|FG999437
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|209713657|gb|BW679369.1|BW679369
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCCAAT                         GGATTTGAAGTCAATTACTGAC
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGAC
EST: gi|214008347|gb|DB986289.1|DB986289
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAG-TTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|209713658|gb|BW679370.1|BW679370
EST:     ACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: ACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|208319281|gb|GE115458.1|GE115458
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|192326131|gb|FK016958.1|FK016958
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGG-AAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|151402581|gb|EV272394.1|EV272394
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|192299066|gb|FG990394.1|FG990394
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTCGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|151411975|gb|EV281786.1|EV281786
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAAGTTTGCTGCTTCATGATCTCAT
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAA-GTTTGCTGCTTCATGATCTCAT
EST: gi|192315185|gb|FK010009.1|FK010009
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|37996453|gb|CF808042.1|CF808042
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|192325013|gb|FK015434.1|FK015434
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|209712282|gb|BW668476.1|BW668476
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|209715505|gb|BW682171.1|BW682171
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCAT
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCAT
EST: gi|58014594|gb|CX701336.1|CX701336
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|58018793|gb|CX705535.1|CX705535
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|213614866|gb|DB978313.1|DB978313
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAG-TTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|192309197|gb|FG999438.1|FG999438
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|192315186|gb|FK010010.1|FK010010
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
EST: gi|8827780|gb|BE211510.1|BE211510
EST:     AAGATTGACCAAGCGGAGGCTCTGGCTAAACAAGCACTGACCGACCAAAT                         GGATTTTGA-GTCAATGACTGACAGGGAAGTGTGCTGCTTCCTGATCT
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTT-GAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCT
EST: gi|209715506|gb|BW682172.1|BW682172
EST:     AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAAT                         GGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG
genomic: AAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATgtaagcccta ... tggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccattctgtgttttatattattttggtgctgaacagtgttttctggtgtgcagGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCAT
                                      tgttttct  CT-rich tract
     ttctgtgttttatatt  TA-rich tract