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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttgtcattcattgaattgttcctctatgtattttctgcttctgccatctctctcttgattactctgatgaaaactggtcatagtgtaagctttcgtccagctgtttcccattttcttttgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA

Basic information

species Glycine max
transcript GLYMA01G39490.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatttttgtcattcattgaattgttcctctatgtattttctgcttctgccatctctctcttgattactctgatgaaaactggtcatagtgtaagctttcgtccagctgtttcccattttcttt-tgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA-----------------------------------------------------------------------------------------------
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-------------------------------------------------------------------------aataaaaactggtcatagtgtgaactttggtccagctgtttcccatttgttttgttctggctttacagagatatgaaacaacatcaaacatcttatacagGCAAGATATGAAATTCTTAATAAGGGAGAGAAGTCTGTGGTGGGCTCTAAGAATGGGGTGATCGAAGACATTTCACAAACTTTGACTTCTTATCTTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatagtgtaagctttcgtccagctgtttcccattttcttttgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA
                                attttctttt  TA-rich tract