Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttgtcattcattgaattgttcctctatgtattttctgcttctgccatctctctcttgattactctgatgaaaactggtcatagtgtaagctttcgtccagctgtttcccattttcttttgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA

Basic information

species Glycine max
transcript GLYMA01G39490.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatttttgtcattcattgaattgttcctctatgtattttctgcttctgccatctctctcttgattactctgatgaaaactggtcatagtgtaagctttcgtccagctgtttcccattttcttt-tgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA-----------------------------------------------------------------------------------------------
                                                                          || ||||||||||||||||| | |||| |||||||||||||||||||  ||| | |||||||||||||||||||||||| | |||||||||||||||||||||                                                                                                
-------------------------------------------------------------------------aataaaaactggtcatagtgtgaactttggtccagctgtttcccatttgttttgttctggctttacagagatatgaaacaacatcaaacatcttatacagGCAAGATATGAAATTCTTAATAAGGGAGAGAAGTCTGTGGTGGGCTCTAAGAATGGGGTGATCGAAGACATTTCACAAACTTTGACTTCTTATCTTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatagtgtaagctttcgtccagctgtttcccattttcttttgctggctttacagAGATATGAAACACCGTCAAACATCTTATACAGGCAAA
                                attttctttt  TA-rich tract