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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgattcctgacatattctattcttgttgacatggtttatatttctcttgtaagtcacatccttagtgttatttatattttgtttcttattcagTTGACAATACTATAAAGCTTAATGGTGCTGGTGCATTTGCATTTCACCCAACTCTAGAATGGATATTTGTTGGTGATCGACGTGGTACACTACTGGCATG

Basic information

species Glycine max
transcript GLYMA01G39110.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39110.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G150772_T01 (Zea mays), 3'ss of exon 3
gtgagatgattcctgacata---ttctattcttgttgacatggtttatat-ttctcttgtaagtcac-atccttag---tgttatttatattttgtttcttattcagTTGACAATACTATAAAGCTTAATGGTGCTGGTGCATTTGCATTTCACCCAACTCTAGAATGGATATTTGTTGGTGATCGACGTGGTACACTACTGGCATG
     ||   |    || ||   | | || ||   |   ||  || |||| || | |||| | |  | | || | |   | ||| |   |   ||||||   | | ||||||| ||| || ||||| | ||| |||||||| ||||  |||||||| || ||||| |||||||||||||||||| || ||||||| || ||      
acactataccttacaacgtaagatgcgatgctgtattttata-ttcatatgtttttttgtgattttccacccatcggcttcttaatcgcacaatgtttcagTTGCTGTTGACAGTACAATTAAGCTAATTGGAGCTGGTGCTTTTGGGTTTCACCCGACCCTAGAGTGGATATTTGTTGGTGATAGAGGTGGTACTCTCCT------

upper sequence: GLYMA01G39110.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G150772_T02 (Zea mays), 3'ss of exon 5
gtgagatgattcctgacatattctattcttgttgacatggtttatatttctcttgtaagtcacatccttagtgttatttatattttgtttcttattcagTTGACAATACTATAAAGCTTAATGGTGCTGGTGCATTTGCATTTCACCCAACTCTAGAATGGATATTTGTTGGTGATCGACGTGGTACACTACTGGCATG
|| |||||     ||   |||| |||     || | ||| ||| |  |  | ||  |     |  | |     ||| |   |   ||||||   | | ||||||| ||| || ||||| | ||| |||||||| ||||  |||||||| || ||||| |||||||||||||||||| || ||||||| || ||      
gtaagatg--cgatgctgtattttat----attcatatgtttttttgtgattttccacccatcggcttc----ttaatcgcacaatgtttcagTTGCTGTTGACAGTACAATTAAGCTAATTGGAGCTGGTGCTTTTGGGTTTCACCCGACCCTAGAGTGGATATTTGTTGGTGATAGAGGTGGTACTCTCCT------

upper sequence: GLYMA01G39110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G50590.1 (Arabidopsis thaliana), 3'ss of exon 6
------gtgagatgattcctgacatattctattcttgttgacatggtttatatttctcttgtaagtcacatcc-ttagtgttatttatattttgtttcttattcagTTGACAATACTATAAAGCTTAATGGTGCTGGTGCATTTGCATTTCACCCAACTCTAGAATGGATATTTGTTGGTGATCGACGTGGTACACTACTGGCATG
       |  || |||  || |||  |   ||| || ||    |  |   |     | |  | ||  | | ||   |||   |    |  ||||||       ||||||| |||||||| || ||||  || ||  || | ||||| ||||||||||| ||||||||||| |||||||| ||| |  | ||||||||  | || ||
gtgagtttaggaggat--ctcacaagtctcattgtttttattcttctcacttggggtatcctgagcaatagccaccagttaaagcagttctttgttatcctcgcagTTGATAATACTATTAAACTTATCGGCGCAAGTTCGTTTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttctcttgtaagtcacatccttagtgttatttatattttgtttcttattcagTTGACAATACTATAAAGCTTAATGGTGCTGGTGCATTTGCATTTCACCCAACTCTAGAATGGATATTTGTTGGTGATCGACGTGGTACACTACTGGCATG
                                      ttttgtttcttattc  CT-rich tract
                       ttagtgttatttatat  TA-rich tract