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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagagtattactttggctcatgatctatttatttatcctgatattgggaggggataatttggagctataaaagtcattgaaaattgtgttttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCCGTAAGCTCTGATGCGACATTGCTTGCAACTGATGAGCTAGATGCTGTAT

Basic information

species Glycine max
transcript GLYMA01G38410.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193581942|gb|FK534641.1|FK534641
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207808115|gb|GD780116.1|GD780116
EST:     CTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|209700187|gb|BW656291.1|BW656291
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAAATTGAA-TTCAAGAGTATACAGC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAA-TTGAAATTCAAGAGTATACAGC
EST: gi|193511658|gb|FK470887.1|FK470887
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193421717|gb|FK387916.1|FK387916
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAAC-AAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193565831|gb|FK526336.1|FK526336
EST:     GGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: GGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193359822|gb|FK328554.1|FK328554
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGT
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGT
EST: gi|207838103|gb|GD812859.1|GD812859
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193438490|gb|FK402607.1|FK402607
EST:     AAACAAAAGG-TTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: AAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193594815|gb|FK546324.1|FK546324
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGT
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGT
EST: gi|207827396|gb|GD797931.1|GD797931
EST:     ATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: ATCCAATTCTGCTTTCATTTATGTGGACAAAC-AAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208072788|gb|GD872389.1|GD872389
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208294309|gb|GE092154.1|GE092154
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193579562|gb|FK534889.1|FK534889
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193468009|gb|FK434004.1|FK434004
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208154723|gb|GD957540.1|GD957540
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193658053|gb|FK602542.1|FK602542
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAA-GGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193651480|gb|FK596849.1|FK596849
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATT
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATT
EST: gi|208040442|gb|GD841256.1|GD841256
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193547053|gb|FK502390.1|FK502390
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207801656|gb|GD772494.1|GD772494
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAATGGAGAATGGAATTG
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTG
EST: gi|208072717|gb|GD872318.1|GD872318
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208133161|gb|GD932102.1|GD932102
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193724285|gb|FK657545.1|FK657545
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAAGAGTTATTACA
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAA-GAGT-AT-ACA
EST: gi|193719375|gb|FK650041.1|FK650041
EST:     ATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGC
genomic: ATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTG-AGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGC
EST: gi|193546927|gb|FK501424.1|FK501424
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193493633|gb|FK458815.1|FK458815
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193344118|gb|FK312438.1|FK312438
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAGGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193664212|gb|FK610444.1|FK610444
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAGTTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207770661|gb|GD745845.1|GD745845
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATAGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193557307|gb|FK511172.1|FK511172
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193354282|gb|FK322864.1|FK322864
EST:     TTCTGCTTTCATTTATGTGGACAAACAAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: TTCTGCTTTCATTTATGTGGACAAAC-AAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208275370|gb|GE078158.1|GE078158
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193485213|gb|FK452969.1|FK452969
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208231398|gb|GE034399.1|GE034399
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208230855|gb|GE034822.1|GE034822
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208140531|gb|GD937799.1|GD937799
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193562541|gb|FK519072.1|FK519072
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAGTTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193323553|gb|FK289187.1|FK289187
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208309882|gb|GE102568.1|GE102568
EST:     CCAATTCTGCTTTCATTTATGTGGACAAACGAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207833726|gb|GD807167.1|GD807167
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208073352|gb|GD869957.1|GD869957
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|298186286|gb|HO036919.1|HO036919
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207689894|gb|GD672399.1|GD672399
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGT
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGT
EST: gi|193640866|gb|FK587707.1|FK587707
EST:     ACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: ACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208258037|gb|GE050984.1|GE050984
EST:     TATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: TATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193351718|gb|FK318400.1|FK318400
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|6502373|gb|AW203746.1|AW203746
EST:     GTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: GTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208043806|gb|GD841546.1|GD841546
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193510855|gb|FK466737.1|FK466737
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207816434|gb|GD787919.1|GD787919
EST:     TGGAC-AACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: TGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208182610|gb|GD980833.1|GD980833
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|9820374|gb|BE555884.1|BE555884
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193700476|gb|FK635063.1|FK635063
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAGTTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|209725459|gb|BW651578.1|BW651578
EST:     CATCCAATTCTGCTTTCATTTATGTGGACCAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGCNAATTCA-GAGTATACAGC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGA-AATTCAAGAGTATACAGC
EST: gi|193680193|gb|FK625317.1|FK625317
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGG
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGG
EST: gi|193716915|gb|FK655551.1|FK655551
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACGGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193431242|gb|FK394636.1|FK394636
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193659235|gb|FK603466.1|FK603466
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193693620|gb|FK633342.1|FK633342
EST:     GGACAAACAAAAAGGTTTACTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGC
genomic: GGACAAAC-AAAAGGTTT-CTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGC
EST: gi|208231489|gb|GE034420.1|GE034420
EST:     CAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193707220|gb|FK645378.1|FK645378
EST:     ATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: ATCCAATTCTGCTTTCATTTATGTGGACAAAC-AAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207792416|gb|GD763734.1|GD763734
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207827429|gb|GD799168.1|GD799168
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAG
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAG
EST: gi|207839557|gb|GD812074.1|GD812074
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAG
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAG
EST: gi|193720737|gb|FK657823.1|FK657823
EST:     AAACAAAAAGGTTTACTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGC
genomic: AAAC-AAAAGGTTT-CTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGC
EST: gi|207780852|gb|GD751331.1|GD751331
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAA-GGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193720204|gb|FK655348.1|FK655348
EST:     CTGCTTTCATTTATGTGG-CAAACAAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CTGCTTTCATTTATGTGGACAAAC-AAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208311111|gb|GE108515.1|GE108515
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCAT
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCAT
EST: gi|207766334|gb|GD736044.1|GD736044
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207688786|gb|GD671305.1|GD671305
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207847104|gb|GD819561.1|GD819561
EST:     AAAAGGTTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAANGGAATTGAAATTCAAGAGTATACAGCC
genomic: AAAAGG-TTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208211102|gb|GE013941.1|GE013941
EST:     ATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAAG                         GTACAAACTCAT
genomic: ATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGA-Ggtcagtttga ... tttgttccagGTACAAACTCAT
EST: gi|192297119|gb|FG988215.1|FG988215
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193410149|gb|FK370844.1|FK370844
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207753998|gb|GD723792.1|GD723792
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAG
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAG
EST: gi|193467104|gb|FK429851.1|FK429851
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193358835|gb|FK327953.1|FK327953
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208210365|gb|GE003978.1|GE003978
EST:     CATCCAATTCCGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCA
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCA
EST: gi|254327081|gb|GR836690.1|GR836690
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|9986755|gb|BE660863.1|BE660863
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208200359|gb|GD995560.1|GD995560
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCA
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCA
EST: gi|208101238|gb|GD900599.1|GD900599
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|207835051|gb|GD808674.1|GD808674
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|193399735|gb|FK363554.1|FK363554
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208313413|gb|GE116431.1|GE116431
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCA
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCA
EST: gi|208085372|gb|GD884104.1|GD884104
EST:     CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: CATCCAATTCTGCTTTCATTTATGTGGACAAACAAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
EST: gi|208146000|gb|GD943639.1|GD943639
EST:     AAAAGGTTTCTGTTGAG                         GTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC
genomic: AAAAGGTTTCTGTTGAGgtcagtttga ... tttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggaggggataatttggagctataaaagtcattgaaaattgtgttttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCCGTAAGCTCTGATGCGACATTGCTTGCAACTGATGAGCTAGATGCTGTAT
                                            ttttgttcc  CT-rich tract
                               attgaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggagagtattactttggctcatgatctatttatttatcctgatattgggaggggataatttggagctataaaagtcattgaaaattgtgttttgttccagGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCAAGAGTATACAGCCGTAAGCTCTGATGCGACATTGCTTGCAACTGATGAGCTAGATGCTGTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG