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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaatgcttaaaattgttgtttctgatacttaagagaaaatgtttgtttccagccaaaatttcaactgtattaaaatttgaacttttgttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG

Basic information

species Glycine max
transcript GLYMA01G37790.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37790.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g47600.2 (Oryza sativa), 3'ss of exon 5
gtaccaatgcttaaaattgttgtttctgatacttaagagaaaatgtttgtttccagccaaaatttcaactgtattaaaatttgaacttttgttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG
       |   | |      ||| | || |  |||| ||||||| |           ||||  |||      |||     ||    || | | |||| | |||||  ||  | ||||| |  ||||| || |||||||||||||| || |||||||||||||| |||
------gtaactgatggatgtgtgtgtgttttttaaaagaaaatata----------caaaccttctctaacattgcttctt---tttctctcctgata-gGAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG

upper sequence: GLYMA01G37790.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G18230.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaccaatgcttaaaattgttgtttctgatacttaagagaaaatgtttgtttccagccaaaatttcaactgtatta-aaatttgaacttttgttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG
       |||||    | |     ||| |  |||    |   ||      ||   |  || |   ||     || | | | ||||  |    | ||| | |||| || |||||  | || || ||||| ||||| ||||||||||| |||||||| |||||||| |||
------gtgctttctctcgcctcatctta-gctttcatgttcatacaaacttgatgtaaacagg-cagtgaaataacagacttgagataaaatactgtgcagGAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG

upper sequence: GLYMA01G37790.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 4
gtaccaatgcttaaaattgttgtttctgatacttaagagaaa--atgtttgtttccagccaaaatttcaactgtattaaaatttgaacttttgttct---gagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG
|||       || | ||      ||   | | | | || | |  |  | | |||         | || ||   ||| ||||||      || |  ||   | | |||| || || || |||||||| || |||||||||||||| |||||| |||||||||||||||| |||
gtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATGCCTATGATTGATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403411|gb|EV273221.1|EV273221
EST:     GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAG                         GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATC
genomic: GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGgtaccaatgc ... ttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
EST: gi|151412819|gb|EV282631.1|EV282631
EST:     TATGGACGTGCTGGTTCTAATGCAG                         GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
genomic: TATGGACGTGCTGGTTCTAATGCAGgtaccaatgc ... ttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
EST: gi|8402595|gb|BE058229.1|BE058229
EST:     GGACGTGCTGGTTCTAATGCAG                         GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
genomic: GGACGTGCTGGTTCTAATGCAGgtaccaatgc ... ttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
EST: gi|192330469|gb|FK021214.1|FK021214
EST:     GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAG                         GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
genomic: GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGgtaccaatgc ... ttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
EST: gi|192330470|gb|FK021215.1|FK021215
EST:     GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAG                         GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
genomic: GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGgtaccaatgc ... ttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
EST: gi|151412430|gb|EV282242.1|EV282242
EST:     GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAG                         GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG
genomic: GAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGgtaccaatgc ... ttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttccagccaaaatttcaactgtattaaaatttgaacttttgttctgagaagGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG
                                       cttttgttct  CT-rich tract
            aaaatttcaactgtat  TA-rich tract