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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttacactttacatcgtcaataccactagatgtctataccttgaactaaatgttttctaagattgtgtattgtgatatatgaacatttctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC

Basic information

species Glycine max
transcript GLYMA01G36760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36760.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G17730.1 (Arabidopsis thaliana), 3'ss of exon 4
gttagtttttacactttacatcgtcaataccactagatgtctataccttgaactaaat-gttttctaagattgtgtattgtgatatatgaacatttctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
                      || | | | | |    || |   | | |   ||  |  || | |   || | |  || | ||    |     || ||  ||| | |    |  |||| ||   ||| || || ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||| | ||||| ||||||||||
----------------------gttagttctattgtcagttt--gcttcgttttagttcattatgtcgaatcgag--ttctaattcggg-----ttttgtctttctcc----ttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACGGTTCTTGCC

upper sequence: GLYMA01G36760.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G17730.2 (Arabidopsis thaliana), 3'ss of exon 4
gttagtttttacactttacatcgtcaataccactagatgtctataccttgaactaaat-gttttctaagattgtgtattgtgatatatgaacatttctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
                      || | | | | |    || |   | | |   ||  |  || | |   || | |  || | ||    |     || ||  ||| | |    |  |||| ||   ||| || || ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||| | ||||| |         
----------------------gttagttctattgtcagttt--gcttcgttttagttcattatgtcgaatcgag--ttctaattcggg-----ttttgtctttctcc----ttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG---------

upper sequence: GLYMA01G36760.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G35840.1 (Arabidopsis thaliana), 3'ss of exon 4
gttagtttttacactttacatcgtcaataccactagatgtctataccttgaactaaatgttttctaagattgtgtattgtgatatatgaacatttctgcatttgtgcaa---tatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
     ||||| | | || || | ||||    || | || |  || ||     | |||||      |  |        | |  |   |||     ||| | |||||| ||   | |  |||| |||   ||||| || || || ||||||||||| ||||| ||||||||||||||| | ||||||||||| || ||||||||||| || || ||||| |
---gttttttgctcatttcagc-tcaa----acgaaatcttaattcc-----ccaaatgc-----agaaccaaaaggtttagttcttga-----tcttcttttgtgtaactttttgcagGATTTTCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTGCATAGACAATTGGCTCTTCAGGCACGGATCTTGTC

upper sequence: GLYMA01G36760.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 4
gttagtttttaca-ctttacatcgtcaataccactagatgtctataccttgaactaaatgttttctaagattgtgtattgtgatatatgaacatt---tctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
         || | |  ||  |  ||     ||  |  | ||  |    | ||  ||  |  ||  |    | ||||| |     |||  |  |    |  | | || |||| | |  ||||||||  |||||||||||||||  |||| ||||| ||||| || || ||||||||||| || ||||| |||||||||||| |  |||| ||||||||||
--------gtatagccataagttttcctctacataatttctccttcttataaataaataggctttcagtgatttgtatagaagcttatttaattgaaattggaacttctgca-ttttcagGACTTTCAGCTTGGAGAGACAGTCCGAAGTTTGCCCCATTGTCACCATATGTTTCACCTGCCATGCATTGATAAGTGGCTCCTTGGACACGGTTCTTGCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193415120|gb|FK377070.1|FK377070
EST:     ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAG                         GACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
genomic: ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGgttagttttt ... caatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
EST: gi|193613854|gb|FK566348.1|FK566348
EST:     ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAG                         GACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
genomic: ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGgttagttttt ... caatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
EST: gi|193555509|gb|FK515954.1|FK515954
EST:     ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAG                         GACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
genomic: ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGgttagttttt ... caatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
EST: gi|208049766|gb|GD847101.1|GD847101
EST:     ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAG                         GACTTTATGCCTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
genomic: ACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGgttagttttt ... caatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATG
EST: gi|193696771|gb|FK637969.1|FK637969
EST:     AATGTTGTATTGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAG                         GACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCAT
genomic: AATGTTG-AT-GCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGgttagttttt ... caatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaagattgtgtattgtgatatatgaacatttctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
                    atatatgaacattt  TA-rich tract