1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttggtaaaccttaatcatcagtaacaacagtgtctctcattgcaacaacccttttttagccataggctttgaatagagacattttccaaattagggggtttagaatgttgtttctaacgtagtgttgcttcttttcttttttctttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAGATA
species | Glycine max |
transcript | GLYMA01G35660.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTGTGCTCTEST: gi|209728232|gb|BW651667.1|BW651667
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTEST: gi|209728209|gb|BW651644.1|BW651644
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCT
EST: TACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTEST: gi|209727503|gb|BW663737.1|BW663737
genomic: TACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTEST: gi|6951922|gb|AW423990.1|AW423990
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCT
EST: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAG GTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCT
genomic: GCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgttggtaaac ... tctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCT
atgttgtttctaacgtagtgttgcttcttttcttttttctttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAGATA
ttctaac putative branch site (score: 1)
cgtagtgttgcttctt CT-rich tract
ttcttttcttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtaaaccttaatcatcagtaacaacagtgtctctcattgcaacaacccttttttagccataggctttgaatagagacattttccaaattagggggtttagaatgttgtttctaacgtagtgttgcttcttttcttttttctttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG