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...aatattaaaaaaccgatagcacagtctactgcttatatttttattactctgttgcaattttttttactgttttgatacaaaggtgtgctgcattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACG
species | Glycine max |
transcript | GLYMA01G35190.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|14205773|gb|BG839451.1|BG839451
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|254345622|gb|GR855958.1|GR855958
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|193479799|gb|FK445480.1|FK445480
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|193578725|gb|FK535299.1|FK535299
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|192299757|gb|FG990052.1|FG990052
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|26048711|gb|CA785164.1|CA785164
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGTTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|22522544|gb|BU081355.1|BU081355
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGEST: gi|298163466|gb|HO012199.1|HO012199
genomic: CCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
EST: CATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTG AAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
genomic: CATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGgtacttattt ... cattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAG
actctgttgcaattttttttactgttttgatacaaaggtgtgctgcattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACG
ttttgat putative branch site (score: 4)
aattttttttactgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattaaaaaaccgatagcacagtctactgcttatatttttattactctgttgcaattttttttactgttttgatacaaaggtgtgctgcattttgcagAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - -taaaaaa
- - - - - - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctg