1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agctggctgaaaatcaattctaagttctaactctagattttatatgttgttgaaatttttctataacaaactcgtatgattatctgggtattgtctctagGTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAAAAGGTGCAGATTTGGATTTTCTCTCCGTTGCTTTGAAG
species | Glycine max |
transcript | GLYMA01G34690.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGACTTGGGATGGAGAG GTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAAEST: gi|193548510|gb|FK504943.1|FK504943
genomic: TGGACTTGGGATGGAGAGgtagctttcc ... ttgtctctagGTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAA
EST: GGGATGGAGAG GTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAA
genomic: GGGATGGAGAGgtagctttcc ... ttgtctctagGTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAA
gttgttgaaatttttctataacaaactcgtatgattatctgggtattgtctctagGTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAAAAGGTGCAGATTTGGATTTTCTCTCCGTTGCTTTGAAG
ctataac putative branch site (score: 3)
ttgtctct putative PPT
aaatttttctataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctggctgaaaatcaattctaagttctaactctagattttatatgttgttgaaatttttctataacaaactcgtatgattatctgggtattgtctctagGTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAAAAGGTGCAGATTTGGATTTTCTCTCCGTTGCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -tggctga
- - - - - - - - - - - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaactc