Sequence
atgc intronic sequence ATGC exonic sequencegtgataatgactaatgagatgatttagtatttctttgtaccataagtctaaatcaattataatattctaacattaatcatcttccagGTAAAAAATCATTTCCCATTCTTTGACATGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATG
Basic information
species | Glycine max |
transcript | GLYMA01G32360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G32360.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0058g01000.t01 (Vitis vinifera), 3'ss of exon 5
gtgataatgactaatgagatgatttagtatttctttgtaccataagtctaaatcaattataatattctaacattaatcatcttccagGTAAAAAATCATTTCCCATTCTTTGACATGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATG
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--gtaaataacaacaagtcttctaaagcatttccttgatc------tctaaattaccgatag-gtgctaa--ttaatcat-tttcagGTAAAAAATCATTTTCCCTTCTTTGACATGGCTTATCAAGGTTTCGCTAGTGGGGACCTTGACAAGGATGCCAAGGCTATCCGGATATTTCTTGAAGATG
upper sequence: GLYMA01G32360.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ37394 (Selaginella moellendorffii), 3'ss of exon 5
gtgataatgactaatgagatgatttagtatttctttgtaccataagtctaaatcaattataatattctaacattaatcatcttccagGTAAAAAATCATTTCCCATTCTTTGACATGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATG
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------------------------------------gtacagggccttcgatggttttgttccaactgaaaaacctgtttattccagAGTAATAGACTCTTTCCATTCTTTGATATGGCTTATCAAGGATTCGCAAGCGGTGACACGGTCAGAGATGCGCAGGCAATTCGCATATTTATGGAAGATG
upper sequence: GLYMA01G32360.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ33874 (Selaginella moellendorffii), 3'ss of exon 5
gtgataatgactaatgagatgatttagtatttctttgtaccataagtctaaatcaattataatattctaacattaatcatcttccagGTAAAAAATCATTTCCCATTCTTTGACATGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATG
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--------------------------gtacagcctt---cgatggttctgttccaactgaaaaacct----gttta-----ttccagAGCAATGGACTCTTTCCATTCTTTGATATGGCTTATCAAGGATTCGCAAGCGGTGACACGGTCAGAGATGCGCAGGCAATTCGCATATTTATGGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgtaccataagtctaaatcaattataatattctaacattaatcatcttccagGTAAAAAATCATTTCCCATTCTTTGACATGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATG
tcatcttcc CT-rich tract
ataagtctaaatcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgataatgactaatgagatgatttagtatttctttgtaccataagtctaaatcaattataatattctaacattaatcatcttccagGTAAAAAATCATTTCCCATTCTTTGACATGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG