1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgctgaaagactagatttgtaatttattgtcacagttagttatgtaactaaataagaggaagtacatattcttatggattttgttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
species | Glycine max |
transcript | GLYMA01G29420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193357456|gb|FK319252.1|FK319252
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: AGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193392282|gb|FK360107.1|FK360107
genomic: AGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: GAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208324829|gb|GE124797.1|GE124797
genomic: GAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: TTGCGGCTTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193604660|gb|FK555943.1|FK555943
genomic: TTGCGGC-TTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|151404678|gb|EV274492.1|EV274492
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTATAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208116695|gb|GD915411.1|GD915411
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208130535|gb|GD932858.1|GD932858
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: GGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208122119|gb|GD915684.1|GD915684
genomic: GGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193601057|gb|FK551686.1|FK551686
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193703942|gb|FK645190.1|FK645190
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|192326702|gb|FK017329.1|FK017329
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAG-TTGCTGCTGCGTATGATTGTEST: gi|193341112|gb|FK307948.1|FK307948
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208316528|gb|GE113630.1|GE113630
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|207815070|gb|GD787786.1|GD787786
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208223900|gb|GE020973.1|GE020973
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAGTTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208232474|gb|GE032255.1|GE032255
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|207761345|gb|GD730958.1|GD730958
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: TTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208179725|gb|GD973644.1|GD973644
genomic: TTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|207679999|gb|GD663179.1|GD663179
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193371282|gb|FK336879.1|FK336879
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208137437|gb|GD937989.1|GD937989
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: TGGCCTTGCGGCTTTGTTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTTAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193628347|gb|FK576793.1|FK576793
genomic: TGGCTTTGCGGC-TTG-TAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208177758|gb|GD977403.1|GD977403
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: AAACACCGCCGCCGAAGTGGTC-TTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193332574|gb|FK301202.1|FK301202
genomic: AAACACCGCCGCCGAAGTGG-CTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|207816900|gb|GD788441.1|GD788441
genomic: CAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193473878|gb|FK439735.1|FK439735
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208122942|gb|GD925006.1|GD925006
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: TGGCCTTGCGGCTTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208197375|gb|GD995362.1|GD995362
genomic: TGGCTTTGCGGC-TTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: AAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|207746058|gb|GD717784.1|GD717784
genomic: AAACACCGCCGCCGAAGTGGCTTTGCGGCTTG-TAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACGCCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|208269227|gb|GE066007.1|GE066007
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: TAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTEST: gi|193382255|gb|FK348028.1|FK348028
genomic: TAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
EST: CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCAGGAAGGAAG AACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
genomic: CAAACACCGCCGCCGAAGTGGCTTTGCGGCTTGTAAGGCCAGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGT
gtaactaaataagaggaagtacatattcttatggattttgttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
aactaaa putative branch site (score: 2)
ttttgttcttttcct putative PPT
atattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgctgaaagactagatttgtaatttattgtcacagttagttatgtaactaaataagaggaagtacatattcttatggattttgttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAAAAGGTTGCTGCTGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
- tgctgaa
- - - - - - - - - - - - - - -tgtcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgg