1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cacatttcaattttctgaatgtatttcatatttgcaaagctatgtctggacttctgattaaatccacaagttcttgtggttgatcttaattgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAA
species | Glycine max |
transcript | GLYMA01G27840.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTEST: gi|213599235|gb|DB960003.1|DB960003
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttact ... tgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
EST: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT ATACATTCCAAGATACACCTTTAGCTGGCTGGEST: gi|254334106|gb|GR849024.1|GR849024
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttact ... tgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGG
EST: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttact ... tgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
ctggacttctgattaaatccacaagttcttgtggttgatcttaattgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAA
tcttaat putative branch site (score: 3)
tgattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatttcaattttctgaatgtatttcatatttgcaaagctatgtctggacttctgattaaatccacaagttcttgtggttgatcttaattgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - gaatgta
- - - - - - - - - - - - - - - - tgcaaag
- - - - - - - - - - - - - - - - - - - -ctatgtc
- - - - - - - - - - - - - - - - - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaag