1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccacatctaaacagaaaatataaatctcattttccatatcaataacttcacatccagtaccactgcatacttattcatctcattttattccttatgcaagGTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAGGATTTGATGAAATTGG
species | Glycine max |
transcript | GLYMA01G22620.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTG GTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCAEST: gi|5760036|gb|AI965399.1|AI965399
genomic: ATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTGgtatgccttt ... cttatgcaagGTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCA
EST: ATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTG GTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCA
genomic: ATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTGgtatgccttt ... cttatgcaagGTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCA
cttcacatccagtaccactgcatacttattcatctcattttattccttatgcaagGTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAGGATTTGATGAAATTGG
tctcattttattcctt CT-rich tract
attttattccttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacatctaaacagaaaatataaatctcattttccatatcaataacttcacatccagtaccactgcatacttattcatctcattttattccttatgcaagGTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAGGATTTGATGAAATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
ccacatc
- - - - -aacagaaa
- - - - - - - - - - - - - - - - - catatca
- - - - - - - - - - - - - - - - - - - - - - - - cacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgca