1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaaaaataacttgtgtaaatattacaattcagctgtcaataaataaatctaatgttatgtatctaatattttaattgttttctttgaaaaatactgtagGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTCTTCAAGTTTGCAGCTCGT
species | Glycine max |
transcript | GLYMA01G22470.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGATACACCT GGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTCEST: gi|21889499|gb|BQ742712.1|BQ742712
genomic: CTGATACACCTgtaagttttg ... aatactgtagGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTC
EST: TTGGTGGGTGAAATACCTTCTGGACTTGGTCAGAAATCCCTGATACACCT GGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTC
genomic: TTGGTGGGTGAAATACCTTCTGGACTTGGTCAGAAATCCCTGATACACCTgtaagttttg ... aatactgtagGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTC
aaatctaatgttatgtatctaatattttaattgttttctttgaaaaatactgtagGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTCTTCAAGTTTGCAGCTCGT
ttttaat putative branch site (score: 3)
ttatgtatctaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaataacttgtgtaaatattacaattcagctgtcaataaataaatctaatgttatgtatctaatattttaattgttttctttgaaaaatactgtagGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATTGCCTCTTCAAGTTTGCAGCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
aaaaaaa
- - - - -acttgtg
- - - - - - - - - - - - - - - cagctgt
- - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg