1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattttatccctgttttagagaaatatgcatacggcaatgatgtaagaatatattgaaaatttaagattctagtatccctaaagatttcaaatatttgatttttagattcatttcatcctagagaatagtgagaaaatttggttaatgtttttttattgtggattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTTAGGGAGGAGTATGAAGTTGCACAACGCTTTGGAAACCTGGATTTCAAA
species | Glycine max |
transcript | GLYMA01G06630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTEST: gi|10234785|gb|BE803673.1|BE803673
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: GCTAACTCAAATGTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAAAG ATCAGAAATCGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTEST: gi|254324256|gb|GR840573.1|GR840573
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTEST: gi|192321869|gb|FK013233.1|FK013233
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTEST: gi|22930913|gb|BU548052.1|BU548052
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG ATCAGAAATTGCTAGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTEST: gi|10234579|gb|BE803467.1|BE803467
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
tcctagagaatagtgagaaaatttggttaatgtttttttattgtggattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTTAGGGAGGAGTATGAAGTTGCACAACGCTTTGGAAACCTGGATTTCAAA
ggttaat putative branch site (score: 4)
ttaatgtttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttatccctgttttagagaaatatgcatacggcaatgatgtaagaatatattgaaaatttaagattctagtatccctaaagatttcaaatatttgatttttagattcatttcatcctagagaatagtgagaaaatttggttaatgtttttttattgtggattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTTAGGGAGGAGTATGAAGTTGCACAACGCTTTGGAAACCTGGATTTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG