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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgatttgtctcttactttgatttggagaatctctccttagcctcattgaattgatctcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTCCGGGTAGATGAAGTTCTAGACTCTTTGCACAGAATCAATGCGGATCATG

Basic information

species Glycine max
transcript GLYMA01G05860.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312704|gb|FK004392.1|FK004392
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|22525497|gb|BU084308.1|BU084308
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|16995698|gb|BM085070.1|BM085070
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|11412343|gb|BF424354.1|BF424354
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|208288714|gb|GE087527.1|GE087527
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGAC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGAC
EST: gi|192312705|gb|FK004393.1|FK004393
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttgatttggagaatctctccttagcctcattgaattgatctcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTCCGGGTAGATGAAGTTCTAGACTCTTTGCACAGAATCAATGCGGATCATG
                                           tctcttc  CT-rich tract
                                 attgaatt  TA-rich tract