1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attattctttatataatacgtgcatctgagtttttgttagtatttttttgccattgtacatgtttttaatcacttgcttgtcatctgttattatggccagGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
species | Glycine max |
transcript | GLYMA01G05430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATG GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAEST: gi|7232488|gb|AW567843.1|AW567843
genomic: TGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATGgtaaagtttc ... ttatggccagGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
EST: TGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATG GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAEST: gi|298182312|gb|HO026487.1|HO026487
genomic: TGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATGgtaaagtttc ... ttatggccagGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
EST: TGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATG GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
genomic: TGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATGgtaaagtttc ... ttatggccagGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
ttttgccattgtacatgtttttaatcacttgcttgtcatctgttattatggccagGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
ttttaat putative branch site (score: 3)
tacatgtttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattctttatataatacgtgcatctgagtttttgttagtatttttttgccattgtacatgtttttaatcacttgcttgtcatctgttattatggccagGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - -gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctgt