1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttggaagttctcagaaaagcagagctcttccttctcttgtagggattttcatagtcaatgaatgcagcttagctttatttgtttatgcctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGATATGGGTTGTGTTTCCTGAACCTTGCTTTTGATGGATTTACCAATGCAA
species | Glycine max |
transcript | GLYMA01G05170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|19268926|gb|BM885182.1|BM885182
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|13563069|gb|BG551289.1|BG551289
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|151396162|gb|EV266039.1|EV266039
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTGTACTTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|254325032|gb|GR834457.1|GR834457
genomic: TTGTACTTTT-CTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|254321435|gb|GR824752.1|GR824752
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|19453112|gb|BM954522.1|BM954522
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGAEST: gi|6482110|gb|AW201381.1|AW201381
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
EST: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAG ACTAGCTCAAAGACTATCAGCAAGCTGGCACATNCAAATGCTCCCTTTGGA
genomic: TTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGgtttggaagt ... ctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGA
gattttcatagtcaatgaatgcagcttagctttatttgtttatgcctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGATATGGGTTGTGTTTCCTGAACCTTGCTTTTGATGGATTTACCAATGCAA
gcctgat putative branch site (score: 4)
tttatttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggaagttctcagaaaagcagagctcttccttctcttgtagggattttcatagtcaatgaatgcagcttagctttatttgtttatgcctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGATATGGGTTGTGTTTCCTGAACCTTGCTTTTGATGGATTTACCAATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA