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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatacttcacttttgtttctgctgcctaagctgtgaagttgatttattgaatatgctgaattagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG

Basic information

species Glycine max
transcript GLYMA01G04920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04920.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
gttaatacttcactttt-------gtttctgctgcctaagct-gtgaagttgatttattgaatatgctga--attagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
||| |   || |||| |        ||| |||   | || || ||    ||||||| ||   |  |||||  ||   | || |  | || |||||| || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| ||||||
gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgtt--ttgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208134885|gb|GD927498.1|GD927498
EST:     AGTAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: AG-AGCATTAAAACAGAACAACCCTGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
EST: gi|254348791|gb|GR852470.1|GR852470
EST:     CATTAAAACAG-AC-ACCCTGCACAGTACGTATTTTGAATTACAG                         GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
genomic: CATTAAAACAGAACAACCCTGCACAGTACGTATTTTGAATTACAGgttaatactt ... acactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtgaagttgatttattgaatatgctgaattagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
        agttgat  putative branch site (score: 5)
          ttgatttattgaatat  TA-rich tract