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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctatatcagtcattcaatccaaattctttctcttgaaaatattctaattaaaaatgaagattgattgcaatcaatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGAT

Basic information

species Glycine max
transcript GLYMA01G03880.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03880.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G020943_T01 (Zea mays), 3'ss of exon 5
-----------------------------------------------------gtaggctatatcagtcattcaat--ccaaattct-ttctcttgaaaatattctaattaaaaatgaagattgattgcaatcaattt---------gcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGAT
                                                      |  |  |   |||||||    |  |   ||||  | ||| ||||||    |   | ||| ||||| ||| ||| |  |  ||||          ||||  ||||| ||||   || |||||||||||||||||||||||||||  |  | || ||  | |||     |||     || |    |||
gtacattgcacttaagctcgccgctaatattacttgaccatattttacttctgctctgtaaagacagtcatatggtcactgcattcagtgctcatgaaaagggacctgtaaaacatgaatattaattacttttgattttgaatgctcacagGGTTTGCATTGCTTTGTGCTGCTGGCTTCTTTGGTTATATGCTTGCGATGCTCCAACGCCGGCTTTTAGGAATGTCATCAACAACAGAT

upper sequence: GLYMA01G03880.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G031479_T01 (Zea mays), 3'ss of exon 5
-------------------------------------------------------------gtaggctata---tcagt-cattcaat--ccaaattctttctc--ttgaaaatattctaattaaaaatgaagattgattgcaatcaattt---------gcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGAT
                                                             |   |  |||   ||| | ||||||     |||||     |     ||| ||    |   | |||| |||  | | ||| |  |  ||||          ||||  ||||| ||||   || |||||| |||||||||||||||||||||||  | || |   | |||     |||   | || |     ||
gtacatgacacttagctctccactcgtattaattgaccatattttacttctgctctgtaaagccagtcatagggtcactgcattcagcgctcaaatgacagcaaaaatgacaagggacctgtaaaaattgactagtaattacttttgattttgaatgctcacagGGTTTGCATTGCTTTGTGCTGCTGGTTTCTTTGGTTATATGCTTGCATTGCTCCAACACCGGCTTTTAGGAATGCCGTCAACAATCAAT

upper sequence: GLYMA01G03880.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0026g00330.t01 (Vitis vinifera), 3'ss of exon 5
gtaggctatatcagtcattcaatccaaattctttctcttgaaaatattctaatt--aaaaatgaagattgattgcaatcaat--ttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGAT
          | |     || |||||   |   ||| |||| | |  || |  |  | ||||  |  |  | ||   || ||  ||||||| ||||||||||| |||| |||||| || |||||||| ||||| ||| |  | || |||||| | || ||||||||| | ||| |  ||
---------gtaaactgatccatccagtattgatct-ttgatacttctcaatcttgacaaatccatgtgaaatgttctccatgattgcagGGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644898|gb|FK588760.1|FK588760
EST:     ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTG                         GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
genomic: ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctata ... caatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
EST: gi|193529577|gb|FK484852.1|FK484852
EST:     ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGNTTTCCACTTG                         GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
genomic: ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctata ... caatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
EST: gi|208079701|gb|GD873719.1|GD873719
EST:     ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTG                         GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTAT
genomic: ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctata ... caatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcttgaaaatattctaattaaaaatgaagattgattgcaatcaatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGAT
      ttgaaaatattctaat  TA-rich tract