1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaagtgtgcatagttattaattatttaatttacgatagcctgattcttttcatgatttcactgtcaattctattgttgactcttgatatcattttccagAGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCATTTTTTTTTACCCAGTGC
species | Glycine max |
transcript | GLYMA01G03540.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAAT AGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAAEST: gi|193462402|gb|FK425515.1|FK425515
genomic: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAATgtatgccttc ... cattttccagAGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAA
EST: AGAGTTTATCCGAAAACAGATGGAGAAGGAAAT AGACAAATTACGGGCATCAAGGAGTGCAATAATCAGCAGCTGACATTGCAAEST: gi|15814018|gb|BI786293.1|BI786293
genomic: AGAGTTTATCCGAAAACAGATGGAGAAGGAAATgtatgccttc ... cattttccagAGACAAATTACGGGCATCAAGGAGTGCAATA-TCAGCAGCTGACATTGCAA
EST: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAAT AGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAA
genomic: GTCACTGCTCATACTAAAGAGTTTATCCGAAAACAGATGGAGAAGGAAATgtatgccttc ... cattttccagAGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAA
tcttttcatgatttcactgtcaattctattgttgactcttgatatcattttccagAGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCATTTTTTTTTACCCAGTGC
tcattttcc CT-rich tract
atatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtgtgcatagttattaattatttaatttacgatagcctgattcttttcatgatttcactgtcaattctattgttgactcttgatatcattttccagAGACAAATTACGGGCATCAAGGAGTGCAATATCAGCAGCTGACATTGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCATTTTTTTTTACCCAGTGC
- - gtgtgca
- - - - - - - - - - - - - - - - - - -agcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac