1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaagtcctgaagttaaaattgtttttcctttctcctttttcccttctatttccatacgttttctgatgacttctgtcctttttacattttacattttagCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCTTGCAAGCGGGACTCTTCAGC
species | Glycine max |
transcript | GLYMA01G01850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGTTATAATTAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCT CAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCEST: gi|27427092|gb|CA938612.1|CA938612
genomic: CTGTGGTTATAATTAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTgtaagtgatt ... tacattttagCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTC
EST: CTGTGGTTATAATTAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCT CAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTC
genomic: CTGTGGTTATAATTAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTgtaagtgatt ... tacattttagCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTC
tctatttccatacgttttctgatgacttctgtcctttttacattttacattttagCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCTTGCAAGCGGGACTCTTCAGC
ttctgat putative branch site (score: 3)
cttctgtcctttttac putative PPT
tttttacattttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagtcctgaagttaaaattgtttttcctttctcctttttcccttctatttccatacgttttctgatgacttctgtcctttttacattttacattttagCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCTTGCAAGCGGGACTCTTCAGC
- - -tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtc