1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgcaaaaagtgacaaatcacatacacagctggtaactgtatctggtacagttacaaagaaaaatagcttatacaattgtattcatttttgtttcatgaagGTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCGACTTTGGTTTAATTACACTGTTAGCAACAGATGATGTCCCAGGTCTTCA
species | Glycine max |
transcript | GLYMA01G01170.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTCTTGGAGAGCCAATTGCAATTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCGEST: gi|209712021|gb|BW668422.1|BW668422
genomic: AGAAATTCTTGGAGAGCCAATTGCAATTCTGCGTTTGCTGCACTATGAAGgtattggatt ... tttcatgaagGTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCG
EST: AGAAATTCTTGGAGAGCCTATTGCAATTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCGEST: gi|254330589|gb|GR841854.1|GR841854
genomic: AGAAATTCTTGGAGAGCCAATTGCAATTCTGCGTTTGCTGCACTATGAAGgtattggatt ... tttcatgaagGTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCG
EST: AGAAATTCTTGGAGAGCCAATTGCAATTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCG
genomic: AGAAATTCTTGGAGAGCCAATTGCAATTCTGCGTTTGCTGCACTATGAAGgtattggatt ... tttcatgaagGTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCG
tacagttacaaagaaaaatagcttatacaattgtattcatttttgtttcatgaagGTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCGACTTTGGTTTAATTACACTGTTAGCAACAGATGATGTCCCAGGTCTTCA
ttcatttttgtttc CT-rich tract
ttatacaattgtattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaaaagtgacaaatcacatacacagctggtaactgtatctggtacagttacaaagaaaaatagcttatacaattgtattcatttttgtttcatgaagGTCAAGTTTCAGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATACCGACTTTGGTTTAATTACACTGTTAGCAACAGATGATGTCCCAGGTCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG