Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttgtgtgtagaagtgtaaatctacaataactaacattttgctagcacacttagttttgtattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGTTTCTATGCTCGCAATACAATCACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCAC

Basic information

species Glycine max
transcript GLYMA01G00870.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00870.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 5
ccttgtgtgtagaagtgtaaatctacaataactaacattttgctagcacacttagttttgtattggtct---catcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGTTTCTATGCTCGCAATACAATCACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCAC
   ||    |   | |  ||      ||||| ||    |   ||      || |   ||   ||||| |    |  | ||||||| | || |  ||| || |||||||||| |||||||||||| |||| |||||||   ||||||| || ||    ||||||||||| ||||| |||||||||||  | || || |||||||
--ctgaaactgctaatacaagcaagaaataattatagatcaactgattttctaatgcttaatttggtgtatctacaacctgatgacactgatg-gatctgtagGGAGGATACAGGGGTTTCTATTCTCGAAATACAACTTCTTTAACACCAAAGGTCGTGAATGATATTCATAAACGTGGGGGAACCATACTTGGGACATCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208272742|gb|GE066234.1|GE066234
EST:     TGGGGTGAAGAGAGTTCTTGGAATCAAT                         GGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
genomic: TGGGGTGAAGAAAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGTTTCTATGCTCGCAATACAATCACTTTAACCCCTAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacacttagttttgtattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGTTTCTATGCTCGCAATACAATCACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCAC
                                    aaaatgtttt  TA-rich tract