Sequence
atgc intronic sequence ATGC exonic sequencegttaagatctcaaccttattttgatgatagatatggcattgtggtatatttatttctaattttgttgtgggatagGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG
Basic information
species | Glycine max |
transcript | GLYMA01G00430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G00430.2 (Glycine max), 3'ss of exon 5
lower sequence: AT2G07050.1 (Arabidopsis thaliana), 3'ss of exon 4
--------gttaagatctcaacct-tattttgatgatag-atatggca--ttgtggtat---atttatttct-------aattt-----tgttgtggg-atagGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG
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gtactaaagttttgacctctatctgtcctttaaagttatcgtatgaaaatttctgttacttgactcatctttttgcttggatctgctaatactgtaaataaagGTACTTGGAGCTTTTGAATGGTCCGGAAATAACCCACTGCCACCTGAGATATGGCTTCTCCCATATTTCCTGCCAATACATCCAG
upper sequence: GLYMA01G00430.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------gttaagatctcaaccttattttgatgatagatatggcattgtggtatatttatttctaattttgttgtgggatagGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG
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gttcagtgtattttcttcttttcattttaaacagtgaacttcatgtttatgggcactccagagatatgtttaatttgtgtattgcataatggt--aacagGTACTTGGAGTATTTGAATGGTCTGGCAATAATCCTCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAG
upper sequence: GLYMA01G00430.2 (Glycine max), 3'ss of exon 5
lower sequence: PP1S33_211V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------gttaagatctcaaccttattttgatgatagatatggcattgtggtatatttatttctaattttg---ttgtgggat---agGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG
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gtattcaagactcgggtgcttgtatagttatcaaccatgctgtg--gaacggtttgaatatatgattaatctccttgcaaccttcggtttatctgatgccagGTTCTTGGAGTATTTGAATGGTCAGGAAACAATCCCCTGCCTCCTGAAACTTGGATACTGCCGTATTTTCTTCCTATGCATCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120495719|gb|EH223886.1|EH223886EST: GGCATGGTGGTGCTACTTATATAACGTCATGGGGGAAGATGTGGCTTTCA GTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATA
genomic: GGCATGGTGGTGCTACTTATATAACGTCATGGGGGAAGATGTGGCTTTCAgttaagatct ... tgtgggatagGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatgatagatatggcattgtggtatatttatttctaattttgttgtgggatagGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCCCCTGAGATATGGCTCCTTCCATACATGCTTCCATTTCATCCAG
ttctaat putative branch site (score: 2)
ttttgtt CT-rich tract
tatatttatttctaat TA-rich tract