1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggatgcttgtggatagtagagatgttgcattcattgttctcgtttgcctcatactaatgctaataatattattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATCTTTTATTTGAGGGAGGTTGATGATGCTGACAAATTGTATGAGGCAATCA
species | Glycine max |
transcript | GLYMA0169S00210.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGAAACATTCAATTATCAGATTTTGATTGTTGCAACTGGCTCAACA GTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATCEST: gi|308098764|gb|HO760505.1|HO760505
genomic: GAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACAgtaaggatgc ... tattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATC
EST: GAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACA GTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATCEST: gi|192296978|gb|FG990294.1|FG990294
genomic: GAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACAgtaaggatgc ... tattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATC
EST: GAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACA GTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATCEST: gi|213605771|gb|DB968603.1|DB968603
genomic: GAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACAgtaaggatgc ... tattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATC
EST: GAGGAGAAACATTCAATTATCAGATTTTGATTGTTGCAACTGGCTCAACA GTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATC
genomic: GAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACAgtaaggatgc ... tattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATC
ttgcattcattgttctcgtttgcctcatactaatgctaataatattattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATCTTTTATTTGAGGGAGGTTGATGATGCTGACAAATTGTATGAGGCAATCA
ttattttcc CT-rich tract
tcatactaatgctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatgcttgtggatagtagagatgttgcattcattgttctcgtttgcctcatactaatgctaataatattattttccagGTTATAAGGCTGACAGATTTTGGTGTAGAAGGAGCTGATGCGAAAAACATCTTTTATTTGAGGGAGGTTGATGATGCTGACAAATTGTATGAGGCAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG