Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   		37  
 5'  3'   		38  
 5'  3'   		39  
 5'  3'   		40  
 5'  3'   
41  
 5'  3'   		42  
 5'  3'   		43  
 5'  3'   		44  
 5'  3'   		45  
 5'  3'   		46  
 5'  3'   		47  
 5'  3'   		48  
 5'  3'   		49  
 5'  3'   		50  
 5'  3'   		51  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtaataaactaaagtttgaatgcattctctctgtctctctctctctctctcttgctattttttttgacagcttcttttgtgctttattaattatatagttgtggtctaatatttcccattgctttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC

Basic information

species Glycine max
transcript GLYMA03G27270.1
intron # 43
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 43
lower sequence: Vv00s0144g00010.t01 (Vitis vinifera), 3'ss of exon 14
gtgtgtaataaactaaagtttgaatgcattctctctgtctctctctctctctctcttgctattttttttgacagcttcttttgtgctttattaattatatagttgtggtctaatatttcccattgctttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC
                                               | |   ||||    ||  |||    |  ||| |   | | |||  |   |||   || || | ||   |||      | |||||   ||||| |  | || ||||| ||| ||||   || |||| | |||||||||||||| ||||||||||||||||||  |||||| || || || ||||||||| 
----------------------------------------------gtttgagtcttagatttggtttatgtatattcatgcat-cattagcagcaataattttatgctttatcttttgg----gttttgt---agATTTTTTCTGTAACTGTGAGAGTCATCCAAAGAGATTCCGAGGAGAAGAAGGCATCTTTTAATCCAAGGCCATATTTCAGGTTGTTTATTAACTGGCTTT

upper sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 43
lower sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 10
gtgtgtaataaactaaagtttgaatgcattctctctgtctctctctctctctctcttg-ctattttttttgacagcttcttttgtgctttattaattatatagttgtggtctaatatttcccattgctttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC
                                               | |  |||  | |||   ||| |||   ||| | |||  | |      ||  |    |||  |  | | |||   | || | | |  |||||||||||||| || || ||||| |||  ||||||||| |||||||||||  | |||||||||||||| ||   ||||||||| ||||| || |||||  
----------------------------------------------gtttgactccagactaaaatttatgagcccttgtcttgctcatc-----ttggaacaatgttctacactgtttataactggtatattacagATTCTGGCAGTAACCGTGAGATTTATTCAAAAAGATGCTGAGGAGAAGAAAACATCTTTTAATCCAAGACCGTATTTCAGATTTTTCATTAATTGGCTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602693|gb|BQ613024.1|BQ613024
EST:     GGATCAAACAAACTCTTTCTTCTTTCCAAG                         ATTCTGGCAGTTACTGTCAGATTCATTATA
genomic: GGATCAAACAAACTCTTTCTTCTTTCCAAGgtgtgtaata ... tttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgctttattaattatatagttgtggtctaatatttcccattgctttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC
                                  tttcccattgcttt  CT-rich tract
     tttattaattatatag  TA-rich tract