Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcatctgacatcagaaggcaacaataccttggtgcactgttccatgctatcatttgttattaacttaacattttacccttgatattttggtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG

Basic information

species Glycine max
transcript GLYMA20G38320.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38320.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 3'ss of exon 4
tgcatctgacatcagaaggcaacaataccttggtgcactgttccatgctatcatttgttattaacttaacattttacccttgatat-tttggtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
|| | | | | | | | | ||| || | || | | || || | | | | | || | | ||| | | |||| |||||||| |||| ||||| || || ||||| || ||||| ||||||||||| || | ||||||||| ||||||||||| ||||||| || || |
-aaattcttggtgaatttccggttaatcagcgcttaaaagtttaatattgggatgaagtttgaaattgatttctcatacctgttttattttgctcatttagGCTGTGTGGGCCCTAGGAAATGTTGCCGGTGATTCCCCCAGATGCCGTGATCTTGTCCTTGGCCATGGGGCTCTGCTTCCTTTGCTGGCACAGTTGAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924264|gb|AW830290.1|AW830290
EST:     CAATTTTCGTGAAGCTACTTGCTTCTNCTAGTGATGATGTCCGTGAACAG                         GCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGgtatgttatt ... gtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT
EST: gi|16996647|gb|BM086019.1|BM086019
EST:     CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAG                         GCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGgtatgttatt ... gtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctatcatttgttattaacttaacattttacccttgatattttggtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
       atttgttattaactta  TA-rich tract