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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcatctgacatcagaaggcaacaataccttggtgcactgttccatgctatcatttgttattaacttaacattttacccttgatattttggtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG

Basic information

species Glycine max
transcript GLYMA20G38320.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38320.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 3'ss of exon 4
tgcatctgacatcagaaggcaacaataccttggtgcactgttccatgctatcatttgttattaacttaacattttacccttgatat-tttggtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
   ||      | |     |    |  |   | |  |  |||  ||  |   ||    | | || || |  | | |  | || | | ||| |  |    |||| ||||||||  |||| ||||| || || ||||| || ||||| ||||||||||| ||  | ||||||||| ||||||||||| ||||||| || || |
-aaattcttggtgaatttccggttaatcagcgcttaaaagtttaatattgggatgaagtttgaaattgatttctcatacctgttttattttgctcatttagGCTGTGTGGGCCCTAGGAAATGTTGCCGGTGATTCCCCCAGATGCCGTGATCTTGTCCTTGGCCATGGGGCTCTGCTTCCTTTGCTGGCACAGTTGAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924264|gb|AW830290.1|AW830290
EST:     CAATTTTCGTGAAGCTACTTGCTTCTNCTAGTGATGATGTCCGTGAACAG                         GCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGgtatgttatt ... gtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT
EST: gi|16996647|gb|BM086019.1|BM086019
EST:     CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAG                         GCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGgtatgttatt ... gtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctatcatttgttattaacttaacattttacccttgatattttggtactcacagGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
       atttgttattaactta  TA-rich tract