1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtttcttggacataacaaatcccctttttctccattacggaaattccaaaatgtgttatttgttgcattttgctctctagcctgtcttggtccatttggtattctatggatatcctagatggcaccaagctgcataatgctgggtgatttagatatttgtttgtttaatctcagGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCA
species | Glycine max |
transcript | GLYMA20G37930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG GTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGEST: gi|192332835|gb|FK026836.1|FK026836
genomic: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttct ... ttaatctcagGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGG
EST: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG GTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGEST: gi|8404288|gb|BE059922.1|BE059922
genomic: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttct ... ttaatctcagGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGG
EST: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG GTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGG
genomic: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttct ... ttaatctcagGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGG
tggcaccaagctgcataatgctgggtgatttagatatttgtttgtttaatctcagGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCA
gtttaat putative branch site (score: 4)
tttgttt CT-rich tract
atttagatatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcttggacataacaaatcccctttttctccattacggaaattccaaaatgtgttatttgttgcattttgctctctagcctgtcttggtccatttggtattctatggatatcctagatggcaccaagctgcataatgctgggtgatttagatatttgtttgtttaatctcagGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC