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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaattgggcctttccactcctcgggcacttattatgttgtctgtattgttgaagatactatctaactatgtttaatattttttactaatggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCATAGCAGCATTGAGGGGTTATAAACTTCAGGTGACTATGCCGTCTTACG

Basic information

species Glycine max
transcript GLYMA20G37280.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297614|gb|FG989562.1|FG989562
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|254338389|gb|GR845639.1|GR845639
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|254340198|gb|GR858323.1|GR858323
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|308098448|gb|HO760189.1|HO760189
EST:     GAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAGAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATT
genomic: GAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGA-AAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATT
EST: gi|17400150|gb|BM176932.1|BM176932
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|9259980|gb|BE348127.1|BE348127
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttgaagatactatctaactatgtttaatattttttactaatggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCATAGCAGCATTGAGGGGTTATAAACTTCAGGTGACTATGCCGTCTTACG
                                      tactaat  putative branch site (score: 1)
          atactatctaactatg  TA-rich tract