1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatttgatccctgaacctttcgtagacattttgcttgctttctgattgaaattaatgttctcataacttaatatatttccgatggttcctgattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT
species | Glycine max |
transcript | GLYMA20G36140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT AATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGEST: gi|6726931|gb|AW311211.1|AW311211
genomic: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttttt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGG
EST: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT AATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGEST: gi|8283911|gb|BE021470.1|BE021470
genomic: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttttt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGG
EST: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT AATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGEST: gi|298164490|gb|HO014135.1|HO014135
genomic: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttttt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGG
EST: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT AATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGG
genomic: GGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttttt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGG
ttgaaattaatgttctcataacttaatatatttccgatggttcctgattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT
attaatgttctcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgatccctgaacctttcgtagacattttgcttgctttctgattgaaattaatgttctcataacttaatatatttccgatggttcctgattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT
- - - - ccctgaa
- - - - - - - - - - - - - - - - gcttgct
- - - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttcc