Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagatctttctctttctgttcattttttagtcaagcaataaaatttctcttattttctctctacttccttcatgggttcctcgcacacttactttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG

Basic information

species Glycine max
transcript GLYMA20G28420.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28420.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G22425.1 (Arabidopsis thaliana), 3'ss of exon 4
----gagatctttctctttctgttcattttttagtcaagcaataaaatttctcttattttctctctacttccttcatgggttcctcgcacacttacttttt-cagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG-------------------------
     | ||  |     || || |    | |  ||  |    |   ||| ||     |||||||  |||| |||  ||  |     | |||   || | || ||||| |||||||| |||||| ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||||                         
gtataaaattgtgaaacttttgcttgcatctgtgtttattc-tctcattactggatatttctctagactttcttgctgcttatagtgaacaaaaacctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGGTTCTCTCTTTGCTCCTGGAATTGT

upper sequence: GLYMA20G28420.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G22425.2 (Arabidopsis thaliana), 3'ss of exon 4
----gagatctttctctttctgttcattttttagtcaagcaataaaatttctcttattttctctctacttccttcatgggttcctcgcacacttacttttt-cagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG
     | ||  |     || || |    | |  ||  |    |   ||| ||     |||||||  |||| |||  ||  |     | |||   || | || ||||| |||||||| |||||| ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||||
gtataaaattgtgaaacttttgcttgcatctgtgtttattc-tctcattactggatatttctctagactttcttgctgcttatagtgaacaaaaacctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323948|gb|GR836180.1|GR836180
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|120496152|gb|EH224319.1|EH224319
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|192298863|gb|FG987608.1|FG987608
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACACCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|58021912|gb|CX708653.1|CX708653
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|16278546|gb|BI942961.1|BI942961
EST:     CTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: CTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|120528942|gb|EH257076.1|EH257076
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|16278135|gb|BI942744.1|BI942744
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|151393539|gb|EV263414.1|EV263414
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|12691429|gb|BG157765.1|BG157765
EST:     TTGGTAACTTCTTTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAATTATAATTNTG-ACATACCCACTCA
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATT-TGGACATACCCACTCA
EST: gi|16105448|gb|BI893188.1|BI893188
EST:     CATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: CATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|192295567|gb|FG988141.1|FG988141
EST:     TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTG                         GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAG
EST: gi|120528949|gb|EH257083.1|EH257083
EST:     TAGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTATCACTG                         GATTTGTCTGGCCGAACACATCTAAG
genomic: TTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGgtaattttca ... actttttcagGATTTGTCTGGCCGACCACATCTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttattttctctctacttccttcatgggttcctcgcacacttactttttcagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG
                                        cacttac  putative branch site (score: 2)
                                          cttactttttc  CT-rich tract
                                           ttacttttt  TA-rich tract