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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaaaattaaactcctaacttacttgaaggtgccttagcggcattcacttgcaaaattttcaatgacaaatgagtattctgattgtgtcatcgttgcagATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGCCGAGGGATGAACAGTTTGGCCATGTCAAGTTTTCAGATTTTCTGGCTTA

Basic information

species Glycine max
transcript GLYMA20G28290.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323667|gb|FK015973.1|FK015973
EST:     ATTTCCATATCCACGTAGAGGAAGAACTAGTCGTCCACATTGCAAAACAG                         ATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGC
genomic: ATTTCCATATCCACGTAGAGGAAGAACTAGTCGTCCACATTGCAAAACAGgttaccaaca ... atcgttgcagATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGC
EST: gi|254344270|gb|GR851073.1|GR851073
EST:     ATTTCCATATCCACGTAGAGGAAGAACTAGTCGTCCACATTGCAAAACAG                         ATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGC
genomic: ATTTCCATATCCACGTAGAGGAAGAACTAGTCGTCCACATTGCAAAACAGgttaccaaca ... atcgttgcagATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGC
EST: gi|15203969|gb|BI426746.1|BI426746
EST:     AGAACTAGTCGTCCACATTGCAAAACAG                         ATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGC
genomic: AGAACTAGTCGTCCACATTGCAAAACAGgttaccaaca ... atcgttgcagATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacttgcaaaattttcaatgacaaatgagtattctgattgtgtcatcgttgcagATCCTAAAACTGAGTCAAGATTGCATCTTCTAAATCTAAACGTTTATGTGCCGAGGGATGAACAGTTTGGCCATGTCAAGTTTTCAGATTTTCTGGCTTA
                                ttctgat  putative branch site (score: 3)
        aaaattttcaatga  TA-rich tract