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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggttgtttcgtttatttctttatgaagcacatagaaactttaacacgttctgattcttttgttgctcaatgttcattttctttatcagGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACGATAACGGGATTATTCACAGGGATATAAAG

Basic information

species Glycine max
transcript GLYMA20G28090.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28090.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02910.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtggttgtttcgtttatttctttatgaagcacatagaaactttaacacgttctgattcttttgttgctcaatgttcattttctttatcagGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACGATAACGGGATTATTCACAGGGATATAAAG
|||||||  | || | |||    || |||||     ||      ||||  | | |    | |||   ||| | ||| ||||            |||||||| |||||||||||||||||| ||| | ||  | ||||| |||||| | || || ||||| || ||||| ||||||
gtaagtgagttttacatttcaagctatatgatttgtatg-----tttagaatgctgatttgcttaacttgttaaatattca------------gGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactttaacacgttctgattcttttgttgctcaatgttcattttctttatcagGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACGATAACGGGATTATTCACAGGGATATAAAG
              ttctgat  putative branch site (score: 3)
                                      ttcattttctttatc  putative PPT
                                      ttcattttctttat  TA-rich tract