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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtttgtggcagccatatgtatgctaaggttgttgtcttcagCAAGGTCCCACTTCCAAATTACAGATATGATTTGGATGATCGGCGGCCTCAGAGGGAG

Basic information

species Glycine max
transcript GLYMA20G25800.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------------gtatttgtttgtggcagccatatgtatgctaaggttgttgtcttcagCAAGGTCCCACTTCCAAATTACAGATATGATTTGGATGATCGGCGGCCTCAGAGGGAG
                                                       | ||| ||| | |||| |||   ||||||||||||||||||||||| ||| ||||||| || || || || | |||||| |||||   |  ||| |||||||||
gtacatcaatcatgctgctcctttctttcttctttctcactagtacaaccatttctgtttcttttttgcagTCATGCATATGCTAAGGTTGTTGTCTTCAGTAAGATCCCACTCCCCAACTATAGGTTTGATTTAGATGACAAGAAGCCACAGAGGGAG

upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------------------------------------gtatttgtttgtggcagccatatgtatgctaaggttgttgtcttcagCAAGGTCCCACTTCCAAATTACAGATATGATTTGGATGATCGGCGGCCTCAGAGGGAG
                                                                         ||  || | | |||||||||| | ||||  || ||||||||||| || ||||| ||||| ||||| ||||||| |||| | |||||  |||| || |||||||||
gtaacttcaacttcaatagagtagctgttcttatcattggatttgcacttagttaccatattgatttcaagttgtcattatctttggcagCCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTACAGATTTGATCTAGATGACAGGCGCCCACAGAGGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttgtttgtggcagccatatgtatgctaaggttgttgtcttcagCAAGGTCCCACTTCCAAATTACAGATATGATTTGGATGATCGGCGGCCTCAGAGGGAG
                                                    ttgtcttc  CT-rich tract
         tatttgttt  TA-rich tract