1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctttacatatactgacacatctgtattttcatctgcttagacatgtataaaataaatatgtaagttatttacttaatatttgttttaatttcatgtaagGTTTTGAAGGAAAAGAATCCAACTTGGCTGCAGTAGTTACACTGGCTTCATCTCTGGACTACACATCATCCAAATCAACTCTGAAGTTACTCTTACCGCT
species | Glycine max |
transcript | GLYMA20G25590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGACACTCCATGGGTGGTATCCTGCTTTACTCCATGCTGTCACGGTTTG GTTTTGAAGGAAAAGAATCCAACTTGGCTGCAGTAGTTACACTGGCTTCAT
genomic: TGGACACTCCATGGGTGGTATCCTGCTTTACTCCATGCTGTCACGGTTTGgtaagtttta ... ttcatgtaagGTTTTGAAGGAAAAGAATCCAACTTGGCTGCAGTAGTTACACTGGCTTCAT
gtataaaataaatatgtaagttatttacttaatatttgttttaatttcatgtaagGTTTTGAAGGAAAAGAATCCAACTTGGCTGCAGTAGTTACACTGGCTTCATCTCTGGACTACACATCATCCAAATCAACTCTGAAGTTACTCTTACCGCT
ttttaat putative branch site (score: 3)
aaataaatatgtaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttacatatactgacacatctgtattttcatctgcttagacatgtataaaataaatatgtaagttatttacttaatatttgttttaatttcatgtaagGTTTTGAAGGAAAAGAATCCAACTTGGCTGCAGTAGTTACACTGGCTTCATCTCTGGACTACACATCATCCAAATCAACTCTGAAGTTACTCTTACCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - catatac
- - - - - - -tgacaca
- - - - - - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - -aaaataa