1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaataaaaatctcactgatcatttattgtctaatttgttttcactgcttcattagagccttggtctttacagatttatttgatgttcatattgtcacagAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCT
species | Glycine max |
transcript | GLYMA20G24450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATC AGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTEST: gi|193485620|gb|FK449105.1|FK449105
genomic: GTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCgtaagtcttc ... attgtcacagAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCT
EST: GTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATC AGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTEST: gi|298177815|gb|HO027368.1|HO027368
genomic: GTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCgtaagtcttc ... attgtcacagAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCT
EST: GTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATC AGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACT
genomic: GTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCgtaagtcttc ... attgtcacagAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCT
tgcttcattagagccttggtctttacagatttatttgatgttcatattgtcacagAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCT
atttgat putative branch site (score: 5)
tttacagatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaataaaaatctcactgatcatttattgtctaatttgttttcactgcttcattagagccttggtctttacagatttatttgatgttcatattgtcacagAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT