1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcttgtagttatgatacaacccacttcccaaaagatataatcataattatattcagcataagaaatgttatttattttttatttgtattgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTTTGTCTGACCCTTAGCATTGCAAATA
species | Glycine max |
transcript | GLYMA20G22720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA GCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTEST: gi|16995640|gb|BM085012.1|BM085012
genomic: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACAgtaagataat ... tgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCT
EST: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA GCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTEST: gi|213608370|gb|DB963104.1|DB963104
genomic: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACAgtaagataat ... tgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCT
EST: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA GCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTEST: gi|298181305|gb|HO022744.1|HO022744
genomic: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACAgtaagataat ... tgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCT
EST: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA GCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTEST: gi|23057344|gb|BU578018.1|BU578018
genomic: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACAgtaagataat ... tgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCT
EST: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA GCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACAgtaagataat ... tgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCT
taattatattcagcataagaaatgttatttattttttatttgtattgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTTTGTCTGACCCTTAGCATTGCAAATA
ataagaaatgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttgtagttatgatacaacccacttcccaaaagatataatcataattatattcagcataagaaatgttatttattttttatttgtattgttcaacagGCGATTCTGTGGATTGTGCTGGCTATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTTTGTCTGACCCTTAGCATTGCAAATA
-tgcttgt
- - - - - - - - -acaaccc
- - - - - - - - - - - - -cttccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaaa