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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC

Basic information

species Glycine max
transcript GLYMA20G22600.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaatt-ctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
       || | |||||  |  ||  | || |||| | |  ||  | |   ||| | ||      |   |  || || || |||   ||  |||   |   |||| || ||||| || |||||||||||||||||||| || |||||||||||||| ||||| || |||||||| || || ||||| ||||| ||||||||||
------gtaagaatcca--tatctttacgatatgcctgttattttcttccacaa-agaacaatttttcatgctgtcattttctggttttctgtgccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAACTTCAAACTATGCGTCTTCTTGACC

upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
gtaaaatta-tgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
 |||  | | || | ||||     |      |||   |   | |  | ||         ||    |       | |  ||   |||| |   | || |   |||| || ||| | || | ||| |||||||||||||| || ||||| ||||| || ||||| ||||||||||| || || || |  ||||| || || || |
-taacttcactggagccagaca--tggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC

upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 4
gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggt-tgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
                                    | |   ||| |    ||   |||   |   |    ||  |  ||||    | |   || || || |||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||| ||||||||||||| ||||| || | ||||||||| || ||||
-----------------------------------gtattgctagtccaaacagtgcaacaaaagcaggctttatcgtttcttctttctctttgggaatgcagGCCAAGTGCTTGGAAACCGGAGAAACCGTGGCTATCAAAAAGGTCCTCCAAGACAAGCGGTACAAGAACCGAGAGCTCCAGATAATGCGCCTCCTCGACC

upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 3
gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
                           || |     |  |||||  | ||  |       | || |  || || |          ||||||  | | |  |||| |||||| | ||||| || || || ||||| ||||| |||||  | || || ||||| ||||| |||||||||||||||| |||||||||||||||||
--------------------------gtgtgcaaactcgctttaatcattctag----gctaacgt--ttcttcct---------gttgggcttcacttcagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC

upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 3
gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
                           || |     |  |||||  | ||  |       | || |  || || |          ||||||  | | | ||||| |||||| | ||||| || || || ||||||||||| |||||  | || || ||||| ||||| |||||||||||||||| |||||||||||||||||
--------------------------gtgtgcaaactcgctttaatcattctag----gctaacgt--ttcttcct---------gttgggcttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC

upper sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 4
gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
                              |      |  |  |  |  | ||||| |||  |     |||| |    ||||     |   || || || |||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||| | ||||||||||| ||||| || | ||||||||| || ||||
------------------------------gtattgctagtccaaacagtgcaacaaaagc-aggcttttatcgtttcttctttctctt--tgggaatgcagGCCAAGTGCTTGGAAACCGGAGAAACCGTGGCTATCAAAAAGGTCCTCCAAGACAAGCGCTACAAGAACCGAGAGCTCCAGATAATGCGCCTCCTCGACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591295|gb|DB959865.1|DB959865
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|5605873|gb|AI899971.1|AI899971
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGC
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGC
EST: gi|209716478|gb|BW657522.1|BW657522
EST:     ACATGGCAGAGCGTGTTGTACGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|18039891|gb|BM308185.1|BM308185
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|208250486|gb|GE046921.1|GE046921
EST:     GTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTCGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: GTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|19052551|gb|BM731218.1|BM731218
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209721765|gb|BW666385.1|BW666385
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|7686353|gb|AW757001.1|AW757001
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAAGGTTCTTCA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAA-GGTTCTTCA
EST: gi|254333709|gb|GR848627.1|GR848627
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|213607101|gb|DB965071.1|DB965071
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCA
EST: gi|192296530|gb|FG991636.1|FG991636
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|213604448|gb|DB970624.1|DB970624
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|22522553|gb|BU081364.1|BU081364
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|208111645|gb|GD911911.1|GD911911
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTACTTCA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTT-CTTCA
EST: gi|298175413|gb|HO015046.1|HO015046
EST:     ACATGGCAGAGCATGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|16997007|gb|BM086379.1|BM086379
EST:     TGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: TGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209700632|gb|BW670435.1|BW670435
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|213593805|gb|DB957925.1|DB957925
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCANAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209696848|gb|BW680470.1|BW680470
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTA
EST: gi|254327042|gb|GR836651.1|GR836651
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|8826044|gb|BE209774.1|BE209774
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAT                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGC
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGC
EST: gi|209702060|gb|BW670544.1|BW670544
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCAGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|298177763|gb|HO027316.1|HO027316
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209720625|gb|BW654452.1|BW654452
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|8826054|gb|BE209784.1|BE209784
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACC
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACC
EST: gi|213591448|gb|DB955740.1|DB955740
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|15814184|gb|BI786459.1|BI786459
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|26058927|gb|CA801841.1|CA801841
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|9205156|gb|BE331380.1|BE331380
EST:     CATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: CATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209699787|gb|BW655800.1|BW655800
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTCCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|298189801|gb|HO038204.1|HO038204
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|8825941|gb|BE209671.1|BE209671
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGC
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
               acataattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC