1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcctcaaacaattttttgtttgaatttcattaatttatggtcgaaaaggatggaaatgaacatgcattccttgctttccttctttgctttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAACTAACCAGATA
species | Glycine max |
transcript | GLYMA20G18290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAEST: gi|24136395|gb|BU926905.1|BU926905
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAEST: gi|10845842|gb|BF071193.1|BF071193
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGGCAATGAAA GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTEST: gi|209702527|gb|BW667160.1|BW667160
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGT
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAEST: gi|208031704|gb|GD831226.1|GD831226
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACEST: gi|209727621|gb|BW663781.1|BW663781
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACA-GAAGCCATTGATTCCTTGATACGTAAAGCAGGGTAC
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGEST: gi|192324869|gb|FK015365.1|FK015365
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTG
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAEST: gi|15285733|gb|BI469624.1|BI469624
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAEST: gi|27424259|gb|CA935779.1|CA935779
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAA
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAEST: gi|14012066|gb|BG726997.1|BG726997
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG GTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAEST: gi|209708643|gb|BW678820.1|BW678820
genomic: TAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACA
EST: AACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAAG GT-GGACAAAAACAGAAGCCATTGATTCCTTGA
genomic: AACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAA-Ggtaacttatg ... ttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGA
aaaaggatggaaatgaacatgcattccttgctttccttctttgctttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAACTAACCAGATA
ttccttgctttccttc CT-rich tract
aaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctcaaacaattttttgtttgaatttcattaatttatggtcgaaaaggatggaaatgaacatgcattccttgctttccttctttgctttggtttcagGTTGGACAAAAACAGAAGCCATTGATTCCTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAACTAACCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -cctcaaa
- - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - -ggatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaac