1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttctatcataccaatgcctttagaaattgcttctgcaaagtaaaaaatacatggtattttctaaacatatttatttatttttacttttgttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGA
species | Glycine max |
transcript | GLYMA20G09810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAG ATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGAEST: gi|151396752|gb|EV266625.1|EV266625
genomic: ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatca ... gttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGA
EST: ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAG ATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCA
genomic: ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatca ... gttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCA
aaaatacatggtattttctaaacatatttatttatttttacttttgttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGA
ttctaaa putative branch site (score: 2)
tttttacttttgttc putative PPT
tattttctaaacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctatcataccaatgcctttagaaattgcttctgcaaagtaaaaaatacatggtattttctaaacatatttatttatttttacttttgttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - -caatgcc
- - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaca