1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attgccatttttatattatatcctatcccagactactaaaatgaactgttttcttgagattcaaacaaagcttattcaatgctaaatgtgttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGCTGACCACTGTCAGTAGGAAAGATCATAGGGAGGAGGGGAACGAGGCTGA
species | Glycine max |
transcript | GLYMA20G08260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTG ACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGCEST: gi|192312316|gb|FK005320.1|FK005320
genomic: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTGgtgagttaat ... ttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGC
EST: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTG ACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGCEST: gi|151398484|gb|EV268355.1|EV268355
genomic: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTGgtgagttaat ... ttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGC
EST: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTG ACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGCEST: gi|13481894|gb|BG511237.1|BG511237
genomic: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTGgtgagttaat ... ttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGC
EST: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTG ACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGC
genomic: CTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTGgtgagttaat ... ttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGC
ctgttttcttgagattcaaacaaagcttattcaatgctaaatgtgttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGCTGACCACTGTCAGTAGGAAAGATCATAGGGAGGAGGGGAACGAGGCTGA
tgctaaa putative branch site (score: 2)
ttattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgccatttttatattatatcctatcccagactactaaaatgaactgttttcttgagattcaaacaaagcttattcaatgctaaatgtgttgcttgcagACACTGTGGTGCTAGAGTTCAATCATTACACTCCTGGCTCACGATGGAGGCTGACCACTGTCAGTAGGAAAGATCATAGGGAGGAGGGGAACGAGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- tgccatt
- - - - - - - - - - - - - cccagac
- - - - - - - - - - - - - - - - - - -aaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgct