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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctatatatatggggttgttcctctttagtgtattttatttatgatattatgatttgtaacattcttagttctttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAACTTGACTGCTCTTACTGACCT

Basic information

species Glycine max
transcript GLYMA19G45130.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814899|gb|BQ299377.1|BQ299377
EST:     AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTT                         AAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
genomic: AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTTgtatgtttct ... ttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
EST: gi|7042246|gb|AW472140.1|AW472140
EST:     AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTT                         AAATCTTGCTTATAACAACATCACANGGACAGTACCTTATTCGATTTCTAA
genomic: AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTTgtatgtttct ... ttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
EST: gi|213595224|gb|DB962363.1|DB962363
EST:     AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTT                         AAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
genomic: AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTTgtatgtttct ... ttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
EST: gi|209706938|gb|BW683227.1|BW683227
EST:     AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTT                         AAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
genomic: AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTTgtatgtttct ... ttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
EST: gi|207801336|gb|GD773448.1|GD773448
EST:     AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTT                         AAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
genomic: AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTTgtatgtttct ... ttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
EST: gi|20814831|gb|BQ299309.1|BQ299309
EST:     AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTT                         AAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA
genomic: AGTCTTGGTGGCAGCATACCGTACCAACTTCCTCCATATTTGCAGCACTTgtatgtttct ... ttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtattttatttatgatattatgatttgtaacattcttagttctttgtatgcagAAATCTTGCTTATAACAACATCACAGGGACAGTACCTTATTCGATTTCTAACTTGACTGCTCTTACTGACCT
                          ttgtaac  putative branch site (score: 2)
                                         ttctttgt  putative PPT
     ttttatttatgatatt  TA-rich tract