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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctgtgatttatcatcctcttaaatagcttatgggtgtatgtcaatttatttaatctaatgcttttcacattatttttaaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG

Basic information

species Glycine max
transcript GLYMA19G43690.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401612|gb|EV269865.1|EV269865
EST:     TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
EST: gi|192303317|gb|FG997403.1|FG997403
EST:     TCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: TCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
EST: gi|15337669|gb|BI498325.1|BI498325
EST:     TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAAC
genomic: TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAAC
EST: gi|192303316|gb|FG997402.1|FG997402
EST:     TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
EST: gi|15200128|gb|BI424187.1|BI424187
EST:     GTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: GTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtgtatgtcaatttatttaatctaatgcttttcacattatttttaaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
                     atctaat  putative branch site (score: 3)
                                      ttattttt  putative PPT
           aatttatttaatctaa  TA-rich tract