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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgattgcaagctgttttttgttccaatcaatccttgctcttcatcaataacacagtacttacatagttatttacacctttttaaatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGAACACTCCGACAACACTTTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT

Basic information

species Glycine max
transcript GLYMA19G42990.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 4
gtttgttgattgcaagctgttttttgttccaatcaatccttgctcttcatcaataacacagtacttacatagttatttacacctttttaaatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGAACACTCCGACAACACTTTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT
||||||  |||  || |  |  || |||    |   |  |  |   |    |||   |   |  |||   | |||||| | | | || | ||     |||| ||||||  ||||||   |||||| ||||| || || ||||| ||||||| ||||||||||||||| || || ||||||| |||||||
gtttgtcaatttgaatccatcatt-gtt--ggtt--ttttaacctatggaaaatctgattatttttattgacttattt-cccttattgagatacaccagACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatcaataacacagtacttacatagttatttacacctttttaaatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGAACACTCCGACAACACTTTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT
                 tacttac  putative branch site (score: 1)
                            ttatttacaccttttt  TA-rich tract