1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaatgtcgtttttttttttaactttttattattgtttaaagacaattccacgtactggcctgactattgtttttgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGGGTTTCTTCGACACGGACTGGGAGTGATGATGTATCAGCTATTAAATTG
species | Glycine max |
transcript | GLYMA19G42870.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGEST: gi|22932336|gb|BU549475.1|BU549475
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGEST: gi|192331169|gb|FK023722.1|FK023722
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGEST: gi|214006485|gb|DB987224.1|DB987224
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: ATTTTATCTTCCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGEST: gi|208052764|gb|GD853881.1|GD853881
genomic: ATTTTATCTTCCC-TTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGEST: gi|208171016|gb|GD969299.1|GD969299
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: TTTTTGTATACAACATTCCTAGCAGAC-TTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGEST: gi|208188478|gb|GD984744.1|GD984744
genomic: TTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATG
EST: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGEST: gi|192327942|gb|FK022473.1|FK022473
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
ttattgtttaaagacaattccacgtactggcctgactattgtttttgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGGGTTTCTTCGACACGGACTGGGAGTGATGATGTATCAGCTATTAAATTG
gcctgac putative branch site (score: 3)
ttgttttt putative PPT
tattgtttttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatgtcgtttttttttttaactttttattattgtttaaagacaattccacgtactggcctgactattgtttttgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGGGTTTCTTCGACACGGACTGGGAGTGATGATGTATCAGCTATTAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT