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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagattcttatataactgagaaggaaacatccgttatgagctgtttttctttggcatctttttctaaggccttctttactttttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG

Basic information

species Glycine max
transcript GLYMA19G42870.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42870.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g00750.t01 (Vitis vinifera), 3'ss of exon 4
----gttagattcttatataactgagaaggaaacatccgttatgagctgtttttctttggcatctttttctaaggccttctttactttttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG
         | |||  | |  ||  |||| ||| |       ||   | | ||   | |  ||  |     ||    ||||||| ||||| ||  |||||| ||| || | ||  |  | || |||||||| |||||||||||| || | ||||  ||||| ||||||||||||||||||
gtattcctcaatctagtttttctatgaagcaaagaatttcactggcatttattgagtcgagatact----aaattttttctttaattttt-tttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401734|gb|EV271547.1|EV271547
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|51341748|gb|CO983065.1|CO983065
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|151396422|gb|EV266299.1|EV266299
EST:     GCGACACT-GCT-GTGGC-T-GCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGT-GTCTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTT
EST: gi|192331169|gb|FK023722.1|FK023722
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTACTTTCTG                         GTTGCATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|214006485|gb|DB987224.1|DB987224
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|192298478|gb|FG988479.1|FG988479
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTT-ACCATGCATTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTT
EST: gi|151412683|gb|EV282495.1|EV282495
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTT-ACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|192327942|gb|FK022473.1|FK022473
EST:     CCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: CCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|120492144|gb|EH220311.1|EH220311
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: gi|22932336|gb|BU549475.1|BU549475
EST:     GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG                         GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctgtttttctttggcatctttttctaaggccttctttactttttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG
                                ccttctttactttttg  CT-rich tract
                                     tttacttttt  TA-rich tract