1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggattgttcttccttgtggagctgtgtgtttttctcttcactaacatttgaacatatcttttgtcatgtatttggatttggatttggcgtcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG
species | Glycine max |
transcript | GLYMA19G42180.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG ATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTEST: gi|254314926|gb|GR829919.1|GR829919
genomic: AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGgtttgtttct ... tcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT
EST: AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG ATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT
genomic: AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGgtttgtttct ... tcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT
catttgaacatatcttttgtcatgtatttggatttggatttggcgtcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG
atatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggattgttcttccttgtggagctgtgtgtttttctcttcactaacatttgaacatatcttttgtcatgtatttggatttggatttggcgtcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG
- - - -ttcttcc
- - - - - - - - - ggagctg
- - - - - - - - - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatttg